HL_8BR8_081

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCUGCGAGACGG

Length

12 nucleotides

Bulged bases

8BR8|1|St|C|315, 8BR8|1|St|G|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_081 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1073

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BR8|1|St|C|306
8BR8|1|St|C|307
8BR8|1|St|U|308
8BR8|1|St|G|309
8BR8|1|St|C|310
8BR8|1|St|G|311
8BR8|1|St|A|312
8BR8|1|St|G|313
8BR8|1|St|A|314
8BR8|1|St|C|315
8BR8|1|St|G|316
8BR8|1|St|G|317

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8