HL_8BR8_085

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCCCACAGCCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_085 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.3904

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8BR8|1|St|G|405
8BR8|1|St|C|406
8BR8|1|St|C|407
8BR8|1|St|C|408
8BR8|1|St|A|409
8BR8|1|St|C|410
8BR8|1|St|A|411
8BR8|1|St|G|412
8BR8|1|St|C|413
8BR8|1|St|C|414
8BR8|1|St|C|415

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SK

Ribosomal protein S9

Chain Sb

Ribosomal protein S24