HL_8BR8_091

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAUCAGACACC

Length

11 nucleotides

Bulged bases

8BR8|1|St|C|758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_091 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1259

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8BR8|1|St|G|751
8BR8|1|St|A|752
8BR8|1|St|U|753
8BR8|1|St|C|754
8BR8|1|St|A|755
8BR8|1|St|G|756
8BR8|1|St|A|757
8BR8|1|St|C|758
8BR8|1|St|A|759
8BR8|1|St|C|760
8BR8|1|St|C|761

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain Lt

Large subunit ribosomal RNA; LSU rRNA

Chain SQ

Ribosomal protein S14

Chain Sd

40S ribosomal protein S26