HL_8BR8_092

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GCGCGUC

Length

7 nucleotides

Bulged bases

8BR8|1|St|U|810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_092 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.2985

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8BR8|1|St|G|805
8BR8|1|St|C|806
8BR8|1|St|G|807
8BR8|1|St|C|808
8BR8|1|St|G|809
8BR8|1|St|U|810
8BR8|1|St|C|811

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SD

40S ribosomal protein S3a

Chain Se

Ribosomal protein S27