HL_8BR8_099

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGCGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_099 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1731

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BR8|1|St|G|1085
8BR8|1|St|G|1086
8BR8|1|St|C|1087
8BR8|1|St|G|1088
8BR8|1|St|C|1089

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SC

Ribosomal protein S3

Chain ST

Ribosomal protein S16

Chain SX

Ribosomal protein S20