HL_8BR8_101

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BR8_101 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1892

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BR8|1|St|C|1199
8BR8|1|St|G|1200
8BR8|1|St|C|1201
8BR8|1|St|C|1202
8BR8|1|St|A|1203
8BR8|1|St|G|1204

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SR

Ribosomal protein S15

Chain SV

Ribosomal protein S18

Chain SW

Ribosomal protein S19e