HL_8BR8_106
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGGCGGAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BR8_106 not in the Motif Atlas
- Geometric match to HL_8VTW_001
- Geometric discrepancy: 0.1583
- The information below is about HL_8VTW_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8BR8|1|LD|C|48
8BR8|1|LD|G|49
8BR8|1|LD|G|50
8BR8|1|LD|C|51
8BR8|1|LD|G|52
8BR8|1|LD|G|53
8BR8|1|LD|A|54
8BR8|1|LD|G|55
8BR8|1|LD|C|56
8BR8|1|LD|G|57
Current chains
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain LG
- Ribosomal protein L39
- Chain LY
- Ribosomal protein L23A
- Chain Li
- Ribosomal protein L29
- Chain Lk
- Ribosomal protein L37
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
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