HL_8BRM_025

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

ACGCGCAGAU

Length

10 nucleotides

Bulged bases

8BRM|1|Lt|C|596, 8BRM|1|Lt|G|600, 8BRM|1|Lt|A|601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_025 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1785

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8BRM|1|Lt|A|593
8BRM|1|Lt|C|594
8BRM|1|Lt|G|595
8BRM|1|Lt|C|596
8BRM|1|Lt|G|597
8BRM|1|Lt|C|598
8BRM|1|Lt|A|599
8BRM|1|Lt|G|600
8BRM|1|Lt|A|601
8BRM|1|Lt|U|602

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LQ

Ribosomal protein L17

Chain Lk

Ribosomal protein L37