HL_8BRM_026

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8BRM|1|Lt|A|630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_026 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1876

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BRM|1|Lt|G|627
8BRM|1|Lt|C|628
8BRM|1|Lt|G|629
8BRM|1|Lt|A|630
8BRM|1|Lt|A|631
8BRM|1|Lt|A|632
8BRM|1|Lt|G|633
8BRM|1|Lt|A|634
8BRM|1|Lt|C|635

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LO

Ribosomal protein L15

Chain Lk

Ribosomal protein L37