HL_8BRM_029

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUGGCCUG

Length

8 nucleotides

Bulged bases

8BRM|1|Lt|C|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_029 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.2102

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BRM|1|Lt|C|788
8BRM|1|Lt|U|789
8BRM|1|Lt|G|790
8BRM|1|Lt|G|791
8BRM|1|Lt|C|792
8BRM|1|Lt|C|793
8BRM|1|Lt|U|794
8BRM|1|Lt|G|795

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LF

Ribosomal protein L5

Chain LU

Ribosomal protein L21

Chain Lc

Ribosomal protein L29