HL_8BRM_049

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUUACUAGAAA

Length

11 nucleotides

Bulged bases

8BRM|1|Lt|A|1627, 8BRM|1|Lt|C|1628, 8BRM|1|Lt|U|1629, 8BRM|1|Lt|A|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_049 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.2461

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8BRM|1|Lt|U|1624
8BRM|1|Lt|U|1625
8BRM|1|Lt|U|1626
8BRM|1|Lt|A|1627
8BRM|1|Lt|C|1628
8BRM|1|Lt|U|1629
8BRM|1|Lt|A|1630
8BRM|1|Lt|G|1631
8BRM|1|Lt|A|1632
8BRM|1|Lt|A|1633
8BRM|1|Lt|A|1634

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain Lk

Ribosomal protein L37