HL_8BRM_053

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGCAAUUUC

Length

9 nucleotides

Bulged bases

8BRM|1|Lt|U|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_053 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1776

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BRM|1|Lt|G|1780
8BRM|1|Lt|G|1781
8BRM|1|Lt|C|1782
8BRM|1|Lt|A|1783
8BRM|1|Lt|A|1784
8BRM|1|Lt|U|1785
8BRM|1|Lt|U|1786
8BRM|1|Lt|U|1787
8BRM|1|Lt|C|1788

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LW

Ribosomal protein L23

Chain St

Small subunit ribosomal RNA; SSU rRNA