HL_8BRM_078
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGUCGCGGC
- Length
- 9 nucleotides
- Bulged bases
- 8BRM|1|St|G|250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BRM_078 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.1732
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
8BRM|1|St|G|243
8BRM|1|St|G|244
8BRM|1|St|U|245
8BRM|1|St|C|246
8BRM|1|St|G|247
8BRM|1|St|C|248
8BRM|1|St|G|249
8BRM|1|St|G|250
8BRM|1|St|C|251
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SI
- Ribosomal protein S8
- Chain SM
- Ribosomal protein S11
Coloring options: