HL_8BRM_084

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCCCACAGCCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_084 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.3607

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8BRM|1|St|G|405
8BRM|1|St|C|406
8BRM|1|St|C|407
8BRM|1|St|C|408
8BRM|1|St|A|409
8BRM|1|St|C|410
8BRM|1|St|A|411
8BRM|1|St|G|412
8BRM|1|St|C|413
8BRM|1|St|C|414
8BRM|1|St|C|415

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SK

Ribosomal protein S9

Chain Sb

Ribosomal protein S24