HL_8BRM_094

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GACUCAACGC

Length

10 nucleotides

Bulged bases

8BRM|1|St|G|940

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BRM_094 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.165

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BRM|1|St|G|932
8BRM|1|St|A|933
8BRM|1|St|C|934
8BRM|1|St|U|935
8BRM|1|St|C|936
8BRM|1|St|A|937
8BRM|1|St|A|938
8BRM|1|St|C|939
8BRM|1|St|G|940
8BRM|1|St|C|941

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain ST

Ribosomal protein S16

Chain SV

Ribosomal protein S18

Chain SX

Ribosomal protein S20