HL_8BTK_017

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_017 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4008

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8BTK|1|A2|U|886
8BTK|1|A2|A|887
8BTK|1|A2|U|888
8BTK|1|A2|U|889
8BTK|1|A2|U|890
8BTK|1|A2|U|891
8BTK|1|A2|G|892
8BTK|1|A2|U|893
8BTK|1|A2|U|894
8BTK|1|A2|G|895
8BTK|1|A2|G|896
8BTK|1|A2|U|897
8BTK|1|A2|U|898
8BTK|1|A2|U|899
8BTK|1|A2|U|900
8BTK|1|A2|C|901
8BTK|1|A2|G|902

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ak

40S ribosomal protein S11