HL_8BTK_035

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAGUGGUUAG

Length

10 nucleotides

Bulged bases

8BTK|1|AT|G|17, 8BTK|1|AT|G|18, 8BTK|1|AT|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_035 not in the Motif Atlas

Geometric match to HL_1N78_001

Geometric discrepancy: 0.2542

The information below is about HL_1N78_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8BTK|1|AT|U|13
8BTK|1|AT|A|14
8BTK|1|AT|G|15
8BTK|1|AT|U|16
8BTK|1|AT|G|17
8BTK|1|AT|G|18
8BTK|1|AT|U|19
8BTK|1|AT|U|20
8BTK|1|AT|A|21
8BTK|1|AT|G|22

Current chains

Chain AT

P-site tRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

Ribosomal protein L11

Chain Bo

eL42