HL_8BTK_060

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8BTK|1|B5|A|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_060 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1226

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BTK|1|B5|G|1582
8BTK|1|B5|C|1583
8BTK|1|B5|G|1584
8BTK|1|B5|A|1585
8BTK|1|B5|A|1586
8BTK|1|B5|A|1587
8BTK|1|B5|G|1588
8BTK|1|B5|A|1589
8BTK|1|B5|C|1590

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain BN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37