HL_8BTK_063

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8BTK|1|B5|G|1760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_063 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.3939

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BTK|1|B5|C|1755
8BTK|1|B5|U|1756
8BTK|1|B5|G|1757
8BTK|1|B5|G|1758
8BTK|1|B5|C|1759
8BTK|1|B5|G|1760
8BTK|1|B5|U|1761
8BTK|1|B5|G|1762

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29