HL_8BTK_067

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_067 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.1762

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BTK|1|B5|U|1945
8BTK|1|B5|G|1946
8BTK|1|B5|U|1947
8BTK|1|B5|A|1948
8BTK|1|B5|A|1949
8BTK|1|B5|C|1950
8BTK|1|B5|A|1951
8BTK|1|B5|A|1952

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bm

Ubiquitin

Chain Bs

60S acidic ribosomal protein P0

Chain Bt

Ribosomal protein L12