HL_8BTK_082

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8BTK|1|B5|C|2637, 8BTK|1|B5|G|2639, 8BTK|1|B5|A|2641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_082 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.0805

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8BTK|1|B5|C|2635
8BTK|1|B5|G|2636
8BTK|1|B5|C|2637
8BTK|1|B5|A|2638
8BTK|1|B5|G|2639
8BTK|1|B5|C|2640
8BTK|1|B5|A|2641
8BTK|1|B5|G|2642

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BK

Nascent chain

Chain BP

uL22

Chain Bj

Ribosomal protein L37

Chain Bl

eL39