HL_8BTK_091

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8BTK|1|B5|U|3534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_091 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1088

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8BTK|1|B5|U|3528
8BTK|1|B5|C|3529
8BTK|1|B5|U|3530
8BTK|1|B5|A|3531
8BTK|1|B5|A|3532
8BTK|1|B5|U|3533
8BTK|1|B5|U|3534
8BTK|1|B5|A|3535
8BTK|1|B5|G|3536

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BV

Ribosomal protein L23