HL_8BTK_095

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

8BTK|1|B5|A|3960, 8BTK|1|B5|C|3967

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_095 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1138

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8BTK|1|B5|U|3956
8BTK|1|B5|C|3957
8BTK|1|B5|A|3958
8BTK|1|B5|A|3959
8BTK|1|B5|A|3960
8BTK|1|B5|C|3961
8BTK|1|B5|G|3962
8BTK|1|B5|G|3963
8BTK|1|B5|U|3964
8BTK|1|B5|A|3965
8BTK|1|B5|6MZ|3966
8BTK|1|B5|C|3967
8BTK|1|B5|G|3968

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

Ribosomal protein L10

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29