HL_8BTK_120

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGUGAAAU(PSU)

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BTK_120 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.239

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8BTK|1|A2|A|958
8BTK|1|A2|G|959
8BTK|1|A2|G|960
8BTK|1|A2|U|961
8BTK|1|A2|G|962
8BTK|1|A2|A|963
8BTK|1|A2|A|964
8BTK|1|A2|A|965
8BTK|1|A2|U|966
8BTK|1|A2|PSU|967

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain Ae

Ribosomal protein S5

Chain An

40S ribosomal protein S14