HL_8BUU_013

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACACGUGAAAU

Length

11 nucleotides

Bulged bases

8BUU|1|A|G|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_013 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0913

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8BUU|1|A|A|429
8BUU|1|A|C|430
8BUU|1|A|A|431
8BUU|1|A|C|432
8BUU|1|A|G|433
8BUU|1|A|U|434
8BUU|1|A|G|435
8BUU|1|A|A|436
8BUU|1|A|A|437
8BUU|1|A|A|438
8BUU|1|A|U|439

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28