HL_8BUU_019

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAGAU

Length

7 nucleotides

Bulged bases

8BUU|1|A|A|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_019 not in the Motif Atlas

Geometric match to HL_5J7L_174

Geometric discrepancy: 0.2579

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8BUU|1|A|A|656
8BUU|1|A|G|657
8BUU|1|A|A|658
8BUU|1|A|A|659
8BUU|1|A|G|660
8BUU|1|A|A|661
8BUU|1|A|U|662

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4