HL_8BUU_085

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8BUU|1|a|U|476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BUU_085 not in the Motif Atlas

Geometric match to HL_5J7L_174

Geometric discrepancy: 0.1623

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8BUU|1|a|C|472
8BUU|1|a|G|473
8BUU|1|a|A|474
8BUU|1|a|A|475
8BUU|1|a|U|476
8BUU|1|a|A|477
8BUU|1|a|G|478

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16