HL_8BYV_029
3D structure
- PDB id
- 8BYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- 8BYV|1|a|C|1328, 8BYV|1|a|A|1329, 8BYV|1|a|C|1331, 8BYV|1|a|U|1332, 8BYV|1|a|C|1333
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BYV_029 not in the Motif Atlas
- Homologous match to HL_6CZR_100
- Geometric discrepancy: 0.354
- The information below is about HL_6CZR_100
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.2
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8BYV|1|a|C|1325
8BYV|1|a|U|1326
8BYV|1|a|G|1327
8BYV|1|a|C|1328
8BYV|1|a|A|1329
8BYV|1|a|A|1330
8BYV|1|a|C|1331
8BYV|1|a|U|1332
8BYV|1|a|C|1333
8BYV|1|a|G|1334
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
- Chain s
- 30S ribosomal protein S19
Coloring options: