HL_8C00_011

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8C00|1|2|A|452, 8C00|1|2|U|454, 8C00|1|2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C00_011 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1761

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8C00|1|2|U|450
8C00|1|2|A|451
8C00|1|2|A|452
8C00|1|2|U|453
8C00|1|2|U|454
8C00|1|2|C|455
8C00|1|2|A|456

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain d

40S ribosomal protein S24-A