HL_8C00_018

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C00_018 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1526

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8C00|1|2|A|900
8C00|1|2|G|901
8C00|1|2|G|902
8C00|1|2|U|903
8C00|1|2|G|904
8C00|1|2|A|905
8C00|1|2|A|906
8C00|1|2|A|907
8C00|1|2|U|908
8C00|1|2|U|909

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain Z

40S ribosomal protein S14-A

Chain p

Pre-rRNA-processing protein PNO1