HL_8C3A_096

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_096 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.0521

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8C3A|1|AS|G|840
8C3A|1|AS|G|841
8C3A|1|AS|A|842
8C3A|1|AS|A|843
8C3A|1|AS|A|844
8C3A|1|AS|C|845

Current chains

Chain AS

25S

Nearby chains

Chain CK

60S ribosomal protein L43-A

Chain CM

Small subunit ribosomal RNA; SSU rRNA

Chain CY

40S ribosomal protein S11A

Chain DA

40S ribosomal protein S13