HL_8C3A_104

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8C3A|1|AS|A|1241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_104 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3446

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8C3A|1|AS|C|1235
8C3A|1|AS|A|1236
8C3A|1|AS|U|1237
8C3A|1|AS|G|1238
8C3A|1|AS|G|1239
8C3A|1|AS|A|1240
8C3A|1|AS|A|1241
8C3A|1|AS|G|1242
8C3A|1|AS|U|1243
8C3A|1|AS|C|1244
8C3A|1|AS|G|1245

Current chains

Chain AS

25S

Nearby chains