HL_8C3A_115

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_115 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.1096

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8C3A|1|AS|G|1715
8C3A|1|AS|U|1716
8C3A|1|AS|U|1717
8C3A|1|AS|U|1718
8C3A|1|AS|A|1719
8C3A|1|AS|U|1720
8C3A|1|AS|C|1721

Current chains

Chain AS

25S

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain CK

60S ribosomal protein L43-A