HL_8C3A_130

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUCAAAC

Length

8 nucleotides

Bulged bases

8C3A|1|AS|C|2517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_130 not in the Motif Atlas

Homologous match to HL_8C3A_053

Geometric discrepancy: 0.1227

The information below is about HL_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19906.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8C3A|1|AS|G|2514
8C3A|1|AS|G|2515
8C3A|1|AS|U|2516
8C3A|1|AS|C|2517
8C3A|1|AS|A|2518
8C3A|1|AS|A|2519
8C3A|1|AS|A|2520
8C3A|1|AS|C|2521

Current chains

Chain AS

25S

Nearby chains

Chain BC

60S ribosomal protein L8

Chain CO

40S ribosomal protein S1