HL_8C3A_186

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_186 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.0813

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8C3A|1|B|U|1382
8C3A|1|B|U|1383
8C3A|1|B|U|1384
8C3A|1|B|C|1385
8C3A|1|B|A|1386
8C3A|1|B|A|1387
8C3A|1|B|G|1388

Current chains

Chain B

18S

Nearby chains

Chain T

40S ribosomal protein S17-B

Chain e

40S ribosomal protein S28-B