HL_8C3A_190

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUAGGAAAUUCUGGAA

Length

17 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C3A_190 not in the Motif Atlas

Homologous match to HL_8C3A_226

Geometric discrepancy: 0.4288

The information below is about HL_8C3A_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52706.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8C3A|1|B|U|1673
8C3A|1|B|U|1674
8C3A|1|B|U|1675
8C3A|1|B|A|1676
8C3A|1|B|G|1677
8C3A|1|B|G|1678
8C3A|1|B|A|1679
8C3A|1|B|A|1680
8C3A|1|B|A|1694
8C3A|1|B|U|1695
8C3A|1|B|U|1696
8C3A|1|B|C|1697
8C3A|1|B|U|1698
8C3A|1|B|G|1699
8C3A|1|B|G|1700
8C3A|1|B|A|1701
8C3A|1|B|A|1702

Current chains

Chain B

18S

Nearby chains