HL_8C3A_200

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8C3A|1|CM|U|366
8C3A|1|CM|A|367
8C3A|1|CM|A|368
8C3A|1|CM|G|369
8C3A|1|CM|G|370
8C3A|1|CM|G|371

Current chains

Chain CM

18S

Nearby chains

Chain CP

Ribosomal protein S5

Chain CW

Ribosomal protein S4

Chain CY

40S ribosomal protein S11A

Chain DJ

40S ribosomal protein S22-A

Chain DK

Ribosomal protein S23 (S12)