HL_8C3A_205

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06285.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8C3A|1|CM|A|518
8C3A|1|CM|A|519
8C3A|1|CM|U|520
8C3A|1|CM|G|521
8C3A|1|CM|U|522
8C3A|1|CM|A|523
8C3A|1|CM|A|524
8C3A|1|CM|A|525
8C3A|1|CM|U|526
8C3A|1|CM|A|527
8C3A|1|CM|C|528
8C3A|1|CM|C|529
8C3A|1|CM|U|530

Current chains

Chain CM

18S

Nearby chains

Chain CW

Ribosomal protein S4

Chain DL

40S ribosomal protein S24