Motif HL_05304.2 Version HL_05304.2 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11		12		13	1-13	2-12	3-4	3-11	4-10	4-11	5-8	5-10
1	HL_5E81_248	5E81	0.9267	0	3L	tRNA	A	51	G	52	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	C	62	U	63	ncWW			ncWW
2	HL_7A0S_072	7A0S	0.8086	2	X	LSU rRNA	G	1503	G	1504	U	1505	A	1507	G	1508	A	1509	A	1510	A	1511	A	1512	C	1514	U	1515	A	1516	C	1517	cWW	cWW	ncWH			ncWW		ncWW
3	HL_4WFL_001	4WFL	0.2729	0	A	LSRP RNA	G	19	A	20	G	21	G	22	U	23	A	24	G	25	C	26	G	27	G	28	U	29	G	30	C	31	cWW	cWW			tSH		ntSHa
4	HL_8P9A_203	8P9A	0.0000	0	sR	SSU rRNA	A	520	A	521	U	522	G	523	U	524	A	525	A	526	A	527	U	528	A	529	C	530	C	531	U	532	cWW	ncWWa			ntSH
5	HL_8C3A_205	8C3A	0.1029	0	CM	SSU rRNA	A	518	A	519	U	520	G	521	U	522	A	523	A	524	A	525	U	526	A	527	C	528	C	529	U	530	cWW	ncWWa			tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
AAUGUAAAUACCU	2
AGGUUCGAAUCCU	1
GGUCAGAAAAUCUAC	1
GAGGUAGCGGUGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUGUAAAUACC	2
GGUUCGAAUCC	1
GUCAGAAAAUCUA	1
AGGUAGCGGUG	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F
Heat map statistics: Min 0.10 | Avg 0.53 | Max 0.93

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