HL_8C3A_207

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAGCCAUUUAUGGCGAAC

Length

20 nucleotides

Bulged bases

8C3A|1|CM|U|711, 8C3A|1|CM|A|712, 8C3A|1|CM|U|713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56845.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8C3A|1|CM|G|701
8C3A|1|CM|G|702
8C3A|1|CM|U|703
8C3A|1|CM|A|704
8C3A|1|CM|G|705
8C3A|1|CM|C|706
8C3A|1|CM|C|707
8C3A|1|CM|A|708
8C3A|1|CM|U|709
8C3A|1|CM|U|710
8C3A|1|CM|U|711
8C3A|1|CM|A|712
8C3A|1|CM|U|713
8C3A|1|CM|G|714
8C3A|1|CM|G|715
8C3A|1|CM|C|716
8C3A|1|CM|G|717
8C3A|1|CM|A|718
8C3A|1|CM|A|719
8C3A|1|CM|C|720

Current chains

Chain CM

18S

Nearby chains

Chain CT

40S ribosomal protein S6