HL_8C8X_005

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1719

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8C8X|1|A|U|158
8C8X|1|A|G|159
8C8X|1|A|A|160
8C8X|1|A|A|161
8C8X|1|A|U|162
8C8X|1|A|C|163
8C8X|1|A|C|164
8C8X|1|A|A|165
8C8X|1|A|U|166
8C8X|1|A|A|167
8C8X|1|A|G|168

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28