3D structure

PDB id
8C8X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.93 Å

Loop

Sequence
UGAAUCCAUAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8C8X_005 not in the Motif Atlas
Homologous match to HL_5J7L_138
Geometric discrepancy: 0.1719
The information below is about HL_5J7L_138
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_68257.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8C8X|1|A|U|158
8C8X|1|A|G|159
8C8X|1|A|A|160
8C8X|1|A|A|161
8C8X|1|A|U|162
8C8X|1|A|C|163
8C8X|1|A|C|164
8C8X|1|A|A|165
8C8X|1|A|U|166
8C8X|1|A|A|167
8C8X|1|A|G|168

Current chains

Chain A
23S rRNA

Nearby chains

Chain X
50S ribosomal protein L28

Coloring options:


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