HL_8C8Y_061

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

8C8Y|1|B|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_061 not in the Motif Atlas

Geometric match to HL_1MJI_002

Geometric discrepancy: 0.2668

The information below is about HL_1MJI_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8C8Y|1|B|C|38
8C8Y|1|B|A|39
8C8Y|1|B|U|40
8C8Y|1|B|G|41
8C8Y|1|B|C|42
8C8Y|1|B|C|43
8C8Y|1|B|G|44

Current chains

Chain B

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18