HL_8C8Z_017

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

8C8Z|1|A|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Z_017 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.3567

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

8C8Z|1|A|U|566
8C8Z|1|A|U|567
8C8Z|1|A|U|568
8C8Z|1|A|U|569
8C8Z|1|A|G|570
8C8Z|1|A|U|571
8C8Z|1|A|A|572
8C8Z|1|A|U|573
8C8Z|1|A|A|574
8C8Z|1|A|A|575

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain R

50S ribosomal protein L21