HL_8C91_043

3D structure

PDB id

8C91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.19 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

8C91|1|A|A|1780, 8C91|1|A|U|1781, 8C91|1|A|U|1782, 8C91|1|A|A|1783, 8C91|1|A|A|1784, 8C91|1|A|A|1786

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C91_043 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.5805

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8C91|1|A|U|1777
8C91|1|A|U|1778
8C91|1|A|U|1779
8C91|1|A|A|1780
8C91|1|A|U|1781
8C91|1|A|U|1782
8C91|1|A|A|1783
8C91|1|A|A|1784
8C91|1|A|A|1785
8C91|1|A|A|1786
8C91|1|A|A|1787

Current chains

Chain A

23S rRNA

Nearby chains