HL_8C92_017

3D structure

PDB id

8C92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

8C92|1|A|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C92_017 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.5024

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

8C92|1|A|U|566
8C92|1|A|U|567
8C92|1|A|U|568
8C92|1|A|U|569
8C92|1|A|G|570
8C92|1|A|U|571
8C92|1|A|A|572
8C92|1|A|U|573
8C92|1|A|A|574
8C92|1|A|A|575

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain R

50S ribosomal protein L21