HL_8C93_029

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

8C93|1|A|U|1325, 8C93|1|A|U|1326, 8C93|1|A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C93_029 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3745

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8C93|1|A|G|1324
8C93|1|A|U|1325
8C93|1|A|U|1326
8C93|1|A|A|1327
8C93|1|A|A|1328
8C93|1|A|U|1329
8C93|1|A|C|1330

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22