HL_8C93_045

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CCGGCGAGG

Length

9 nucleotides

Bulged bases

8C93|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C93_045 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.2763

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8C93|1|A|C|486
8C93|1|A|C|487
8C93|1|A|G|488
8C93|1|A|G|489
8C93|1|A|C|490
8C93|1|A|G|491
8C93|1|A|A|492
8C93|1|A|G|493
8C93|1|A|G|494

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22