HL_8C94_021

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

8C94|1|A|U|686, 8C94|1|A|C|687

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C94_021 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.267

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8C94|1|A|U|683
8C94|1|A|G|684
8C94|1|A|A|685
8C94|1|A|U|686
8C94|1|A|C|687
8C94|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34