HL_8C94_022

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUUAGGU

Length

8 nucleotides

Bulged bases

8C94|1|A|U|827, 8C94|1|A|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C94_022 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3936

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8C94|1|A|A|825
8C94|1|A|U|826
8C94|1|A|U|827
8C94|1|A|U|828
8C94|1|A|A|829
8C94|1|A|G|830
8C94|1|A|G|831
8C94|1|A|U|832

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain W

50S ribosomal protein L27