HL_8C94_034

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8C94|1|A|A|2268, 8C94|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C94_034 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.2427

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8C94|1|A|C|2264
8C94|1|A|U|2265
8C94|1|A|A|2266
8C94|1|A|A|2267
8C94|1|A|A|2268
8C94|1|A|G|2269
8C94|1|A|A|2270
8C94|1|A|G|2271
8C94|1|A|U|2272
8C94|1|A|A|2273
8C94|1|A|A|2274
8C94|1|A|C|2275
8C94|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L27